PH01000994G0020's details annotation
1.Annotation
ICBR annotation: FHA domain containing protein, putative, expressed
Blast result AT3G07220 : 2.10E-79
Blast annotation: SMAD/FHA domain-containing protein
2.Location
Scaffold: PH01000994
Strand: +
| Region | Start | End |
| gene | 6988 | 14449 |
| mRNA | 6988 | 14449 |
| exon | 6988 | 7894 |
| exon | 10612 | 10769 |
| exon | 13614 | 14449 |
| CDS | 7420 | 7894 |
| CDS | 10612 | 10769 |
| CDS | 13614 | 13823 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001619 | RLK-Pelle_LysM (from iTAK) Trihelix Transcription_Regulator(from PlantTFDB) Mo-molybdopterin cofactor biosynthetic process, molybdopterin cofactor biosynthetic process, SOS_response 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, riboflavin biosynthetic process, Endocytosis Homologous_recombination |
| coexpression network | CFinderM001795 | SOS_response Homologous_recombination SNARE_interactions_in_vesicular_transport DNA metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00498.25 | FHA | 7 | 90 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.