Gene details

Annotation of co-expression genes

PH01000996G0480's details annotation

1.Annotation

ICBR annotation: eukaryotic translation initiation factor 3 subunit B, putative, expressed

Blast result AT5G27640 : 0.00E+00
Blast annotation: translation initiation factor 3B1

2.Location

Scaffold: PH01000996
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	details
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000677	UMP biosynthetic process, 'de novo' pyrimidine base biosynthetic process, purine ribonucleotide biosynthetic process, histidyl-tRNA aminoacylation, Alanine,_aspartate_and_glutamate_metabolism IMP biosynthetic process, dihydroorotate oxidase activity, dihydroorotate dehydrogenase activity, translation_initiation_factor_binding N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, histidine-tRNA ligase activity, nucleotide-excision repair, proteolysis, ATP-dependent DNA helicase activity, translational initiation, nucleobase-containing compound metabolic process, RNA-dependent DNA replication,
coexpression network	CFinderM001167	RNA_transport Alanine,_aspartate_and_glutamate_metabolism eukaryotic translation initiation factor 3 complex, IMP biosynthetic process, purine ribonucleotide biosynthetic process, multicellular organismal development, translation_initiation_factor_binding N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, bHLH Transcription_Regulator(from PlantTFDB) translational initiation, Purine_metabolism

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
RNA transport	translation initiation factor 3 subunit B	ko03013	K03253

10.Gene Ontology

GO Accession	GO Annotation
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding
GO:0003723	RNA binding
GO:0003743	translation initiation factor activity
GO:0003964	RNA-directed DNA polymerase activity
GO:0004190	aspartic-type endopeptidase activity
GO:0005515	protein binding
GO:0005852	eukaryotic translation initiation factor 3 complex
GO:0006278	RNA-dependent DNA replication
GO:0006413	translational initiation
GO:0006508	proteolysis
GO:0031369	translation initiation factor binding

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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