PH01000998G0470's details annotation
1.Annotation
ICBR annotation: dehydration response related protein, putative, expressed
Blast result AT4G00750 : 0
Blast annotation: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
2.Location
Scaffold: PH01000998
Strand: +
| Region | Start | End |
| gene | 355153 | 360575 |
| mRNA | 355153 | 360575 |
| exon | 355153 | 355920 |
| exon | 356057 | 356301 |
| exon | 357867 | 358462 |
| exon | 358548 | 358940 |
| exon | 359064 | 359141 |
| exon | 359242 | 360575 |
| CDS | 355635 | 355920 |
| CDS | 356057 | 356301 |
| CDS | 357867 | 358462 |
| CDS | 358548 | 358940 |
| CDS | 359064 | 359141 |
| CDS | 359242 | 359464 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000013 | cellulose biosynthetic process, cellulose synthase (UDP-forming) activity, response to oxidative stress, extracellular polysaccharide biosynthetic process, hydrolase activity, hydrolyzing O-glycosyl compounds, carbohydrate metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03141.15 | Methyltransf_29 | 95 | 250 |
| PF03141.15 | Methyltransf_29 | 274 | 596 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008168 | methyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.