Annotation of co-expression genes

PH01001001G0630's details annotation

1.Annotation

ICBR annotation: serine/threonine-protein kinase receptor precursor, putative, expressed

Blast result AT4G03230 : 2.60E-53
Blast annotation: S-locus lectin protein kinase family protein

2.Location

Scaffold: PH01001001
Strand: +

RegionStartEnd
gene415684421106
mRNA415684421106
exon415684416064
exon416517416657
exon416868416925
exon417153417227
exon417486417569
exon418057418131
exon418361418571
exon418802418871
exon418970419120
exon419203419283
exon420210421106
CDS415943416064
CDS416517416657
CDS416868416925
CDS417153417227
CDS417486417569
CDS418057418131
CDS418361418571
CDS418802418871
CDS418970419120
CDS419203419283
CDS420210420221

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM0003146-phosphofructokinase complex,
heme biosynthetic process,
ferrochelatase activity,
RLK-Pelle_DLSV (from iTAK)
coexpression networkCFinderM001366sulfur compound metabolic process,
endoplasmic reticulum,
phosphatidylinositol phosphorylation,
3'(2'),5'-bisphosphate nucleotidase activity,
RLK-Pelle_DLSV (from iTAK)
Phosphatidylinositol_signaling_system
Inositol_phosphate_metabolism
Sulfur_metabolism
coexpression networkCFinderM001555protein retention in ER lumen,
RLK-Pelle_DLSV (from iTAK)
ER retention sequence binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07714.16Pkinase_Tyr171249
PF07714.16Pkinase_Tyr256313

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.