PH01001006G0490's details annotation
1.Annotation
ICBR annotation: MBTB11 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed
Blast result AT3G06190 : 6.30E-54
Blast annotation: BTB-POZ and MATH domain 2
2.Location
Scaffold: PH01001006
Strand: +
| Region | Start | End |
| gene | 346906 | 348611 |
| mRNA | 346906 | 348611 |
| exon | 346906 | 347949 |
| exon | 347990 | 348611 |
| CDS | 347333 | 347949 |
| CDS | 347990 | 348386 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001228 | cullin-RING ubiquitin ligase complex, SNF2 Transcription_Regulator(from iTAK) Nucleotide_excision_repair cell redox homeostasis, Ubiquitin_mediated_proteolysis ubiquitin-dependent protein catabolic process, |
| coexpression network | CFinderM001572 | Protein_processing_in_endoplasmic_reticulum heat shock protein binding, |
| coexpression network | CFinderM001573 | protein refolding, histone_lysine_methylation cellular protein metabolic process, histone_binding zinc ion binding, histone-lysine N-methyltransferase activity, C2H2 Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00651.30 | BTB | 176 | 270 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.