Gene details

Annotation of co-expression genes

PH01001032G0430's details annotation

1.Annotation

ICBR annotation: pentatricopeptide, putative, expressed

Blast result AT5G13230 : 0.00E+00
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein

2.Location

Scaffold: PH01001032
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM001072	nucleus, TLK (from iTAK) Non-homologous_end-joining SWI/SNF-BAF60b Transcription_Regulator(from iTAK) Homologous_recombination SNF2 Transcription_Regulator(from iTAK) double-strand break repair, histone modification, DNA metabolic process, transcription initiation, DNA-dependent,
coexpression network	CFinderM001640	TLK (from iTAK) transcription factor TFIID complex, SNF2 Transcription_Regulator(from iTAK) transcription initiation, DNA-dependent, Nucleotide_excision_repair Ubiquitin_mediated_proteolysis

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0005515	protein binding

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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