Annotation of co-expression genes

PH01001048G0540's details annotation

1.Annotation

ICBR annotation: BES1/BZR1 homolog protein, putative, expressed

Blast result AT1G19350 : 7.20E-42
Blast annotation: Brassinosteroid signalling positive regulator (BZR1) family protein

2.Location

Scaffold: PH01001048
Strand: +

RegionStartEnd
gene402394406306
mRNA402394406306
exon402394403227
exon403349403783
exon404553404838
exon404892406306
CDS402991403227
CDS403349403783
CDS404553404838
CDS404892404950

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000073BES1 Transcription_Regulator(from PlantTFDB)
large ribosomal subunit,
C2C2-GATA Transcription_Regulator(from iTAK)
GATA Transcription_Regulator(from PlantTFDB)
coexpression networkCFinderM000074Ribosome
translation,
structural constituent of ribosome,
intracellular,
coexpression networkCFinderM000280BES1 Transcription_Regulator(from PlantTFDB)
ubiquitin-dependent protein catabolic process,
ubiquitin thiolesterase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)BES1
Transcription_Regulator(from PlantTFDB)BES1

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF05687.12BES1_N11137

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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