PH01001052G0090's details annotation
1.Annotation
ICBR annotation: dehydrogenase, putative, expressed
Blast result AT1G23740 : 4.90E-81
Blast annotation: Oxidoreductase, zinc-binding dehydrogenase family protein
2.Location
Scaffold: PH01001052
Strand: +
| Region | Start | End |
| gene | 72966 | 75642 |
| mRNA | 72966 | 75642 |
| exon | 72966 | 74296 |
| exon | 74468 | 74791 |
| exon | 74931 | 75090 |
| exon | 75174 | 75642 |
| CDS | 73886 | 74296 |
| CDS | 74468 | 74791 |
| CDS | 74931 | 75090 |
| CDS | 75174 | 75439 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001423 | Glycine,_serine_and_threonine_metabolism intracellular, Arachidonic_acid_metabolism glutathione peroxidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08240.11 | ADH_N | 106 | 168 |
| PF00107.25 | ADH_zinc_N | 238 | 287 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0016747 | transferase activity, transferring acyl groups other than amino-acyl groups |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.