PH01001056G0170's details annotation
1.Annotation
ICBR annotation: bZIP family transcription factor, putative, expressed
Blast result AT4G38900 : 1.90E-38
Blast annotation: Basic-leucine zipper (bZIP) transcription factor family protein
2.Location
Scaffold: PH01001056
Strand: +
| Region | Start | End |
| gene | 103539 | 108477 |
| mRNA | 103539 | 108477 |
| exon | 103539 | 106630 |
| exon | 106762 | 106894 |
| exon | 106972 | 107056 |
| exon | 107955 | 108477 |
| CDS | 106599 | 106630 |
| CDS | 106762 | 106894 |
| CDS | 106972 | 107056 |
| CDS | 107955 | 108199 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000178 | cellular glucan metabolic process, xyloglucan:xyloglucosyl transferase activity, cell wall, apoplast, GH16 Glycoside_Hydrolases WRKY Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | bZIP |
| Transcription_Regulator(from PlantTFDB) | bZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00170.20 | bZIP_1 | 7 | 65 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.