PH01001068G0380's details annotation
1.Annotation
ICBR annotation: ABC-2 type transporter domain containing protein, expressed
Blast result AT1G31770 : 3.20E-44
Blast annotation: ATP-binding cassette 14
2.Location
Scaffold: PH01001068
Strand: -
| Region | Start | End |
| gene | 239506 | 241515 |
| mRNA | 239506 | 241515 |
| exon | 239506 | 241515 |
| CDS | 239699 | 240139 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000115 | Dof Transcription_Regulator(from PlantTFDB) AUX/IAA Transcription_Regulator(from iTAK) C2C2-Dof Transcription_Regulator(from iTAK) TKL-Pl-4 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01061.23 | ABC2_membrane | 3 | 89 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.