PH01001069G0040's details annotation
1.Annotation
ICBR annotation: transporter-related, putative, expressed
Blast result AT4G09810 : 3.40E-92
Blast annotation: Nucleotide-sugar transporter family protein
2.Location
Scaffold: PH01001069
Strand: +
| Region | Start | End |
| gene | 23093 | 25839 |
| mRNA | 23093 | 25839 |
| exon | 23093 | 23465 |
| exon | 23589 | 23773 |
| exon | 23862 | 24062 |
| exon | 25447 | 25608 |
| exon | 25721 | 25839 |
| CDS | 23336 | 23465 |
| CDS | 23589 | 23773 |
| CDS | 23862 | 24062 |
| CDS | 25447 | 25608 |
| CDS | 25721 | 25741 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000909 | Homologous_recombination DNA_replication Mismatch_repair histone-lysine N-methyltransferase activity, single-stranded DNA binding, Golgi vesicle transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03151.15 | TPT | 23 | 207 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.