PH01001075G0490's details annotation
1.Annotation
ICBR annotation: tRNA synthetase class II core domain containing protein, expressed
Blast result AT1G29880 : 0.00E+00
Blast annotation: glycyl-tRNA synthetase / glycine--tRNA ligase
2.Location
Scaffold: PH01001075
Strand: +
| Region | Start | End |
| gene | 334220 | 345280 |
| mRNA | 334220 | 345280 |
| exon | 334220 | 336083 |
| exon | 337962 | 338344 |
| exon | 338421 | 338446 |
| exon | 339432 | 339610 |
| exon | 339751 | 339975 |
| exon | 340398 | 340457 |
| exon | 340603 | 340683 |
| exon | 340761 | 341166 |
| exon | 345017 | 345280 |
| CDS | 335808 | 336083 |
| CDS | 337962 | 338344 |
| CDS | 338421 | 338446 |
| CDS | 339432 | 339610 |
| CDS | 339751 | 339975 |
| CDS | 340398 | 340457 |
| CDS | 340603 | 340683 |
| CDS | 340761 | 341166 |
| CDS | 345017 | 345264 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000760 | CMGC_CLK (from iTAK) cullin-RING ubiquitin ligase complex, cytoplasm, SET Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001081 | proteasome complex, regulation of protein catabolic process, enzyme regulator activity, Rcd1-like Transcription_Regulator(from iTAK) Proteasome binding, transcription factor TFIID complex, glycyl-tRNA aminoacylation, RLK-Pelle_LRR-XII-1 (from iTAK) glycine-tRNA ligase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03129.19 | HGTP_anticodon | 510 | 597 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0004812 | aminoacyl-tRNA ligase activity |
| GO:0004820 | glycine-tRNA ligase activity |
| GO:0005524 | ATP binding |
| GO:0005737 | cytoplasm |
| GO:0006418 | tRNA aminoacylation for protein translation |
| GO:0006426 | glycyl-tRNA aminoacylation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.