|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | proteasome complex, | 5.90E-05 | GO:0000502 | | regulation of protein catabolic process, | 0.000153889 | GO:0042176 | | enzyme regulator activity, | 0.000452366 | GO:0030234 | | Rcd1-like Transcription_Regulator(from iTAK) | 0.004123324 | GFam | | Proteasome | 0.004208606 | KEGG | | binding, | 0.014021742 | GO:0005488 | | transcription factor TFIID complex, | 0.017159056 | GO:0005669 | | glycyl-tRNA aminoacylation, | 0.018674759 | GO:0006426 | | RLK-Pelle_LRR-XII-1 (from iTAK) | 0.027108816 | GFam | | glycine-tRNA ligase activity, | 0.030972586 | GO:0004820 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000072G0300 | ABC transporter family protein | AT4G33460 (1.80E-31) | | PH01000084G0760 | 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit | AT2G32730 (0.00E+00) | | PH01000224G0220 | 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit | AT2G32730 (0.00E+00) | | PH01000500G0020 | Cell differentiation, Rcd1-like protein | AT3G20800 (4.00E-105) | | PH01001075G0490 | glycyl-tRNA synthetase / glycine--tRNA ligase | AT1G29880 (0.00E+00) | | PH01001220G0630 | galacturonosyltransferase 13 | AT3G01040 (0.00E+00) | | PH01001741G0350 | Leucine-rich repeat protein kinase family protein | AT3G47580 (1.00E-137) | | PH01002050G0030 | ubiquitin activating enzyme 2 | AT5G06460 (0.00E+00) | | PH01002328G0180 | proteasome family protein | AT2G19560 (3.00E-105) | | PH01002531G0140 | - | AT5G23700 (1.50E-16) | | PH01005174G0060 | Glycosyl hydrolases family 31 protein | AT5G63840 (0.00E+00) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000256 | signal recognition particle,
proton-transporting two-sector ATPase complex, proton-transporting domain,
| details | | CFinderM000650 | proteasome complex,
Golgi_transport_complex
regulation of protein catabolic process,
cell death,
binding,
enzyme regulator activity,
RNA metabolic process,
| details | | CFinderM000760 | CMGC_CLK (from iTAK)
cullin-RING ubiquitin ligase complex,
cytoplasm,
SET Transcription_Regulator(from iTAK)
| details | | CFinderM001258 | proteasome complex,
regulation of protein catabolic process,
enzyme regulator activity,
Proteasome
RNA_degradation
| details | | CFinderM001370 | proteasome complex,
regulation of protein catabolic process,
enzyme regulator activity,
Proteasome
binding,
small protein activating enzyme activity,
RNA metabolic process,
cellular protein modification process,
| details | | CFinderM001379 | small protein activating enzyme activity,
cellular protein modification process,
Ubiquitin_mediated_proteolysis
proteasome complex,
regulation of protein catabolic process,
Proteasome
enzyme regulator activity,
| details | | CFinderM001402 | phosphatidylinositol-mediated signaling,
RNA 3'-end processing,
RNA polyadenylation,
phosphatidylinositol_biosynthetic_process
phosphatidylinositol phosphorylation,
1-phosphatidylinositol_4-kinase_activity
Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
mRNA_surveillance_pathway
polynucleotide adenylyltransferase activity,
| details |
4.Expression profilings |
