Annotation of co-expression genes

PH01001081G0030's details annotation

1.Annotation

ICBR annotation: photosystem II reaction center PSB28 protein, chloroplast precursor, putative, expressed

Blast result AT4G28660 : 2.30E-51
Blast annotation: photosystem II reaction center PSB28 protein

2.Location

Scaffold: PH01001081
Strand: -

RegionStartEnd
gene522710549
mRNA522710549
exon52276860
exon804310549
CDS63886860
CDS80438163

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000509Whirly Transcription_Regulator(from PlantTFDB)
protochlorophyllide reductase activity,
Photosynthesis
Porphyrin_and_chlorophyll_metabolism
photosystem II,
oxygen evolving complex,
RNA_degradation
coexpression networkCFinderM000686Photosynthesis
Biosynthesis_of_unsaturated_fatty_acids
oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water,
intracellular,
photosystem II,
oxygen evolving complex,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03912.13Psb2874179

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Photosynthesisphotosystem II 13kDa proteinko00195K08903

10.Gene Ontology

GO AccessionGO Annotation
GO:0009523photosystem II
GO:0009654oxygen evolving complex
GO:0015979photosynthesis
GO:0016020membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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