PH01001099G0510's details annotation
1.Annotation
ICBR annotation: MYB family transcription factor, putative, expressed
Blast result AT5G58900 : 1.30E-26
Blast annotation: Homeodomain-like transcriptional regulator
2.Location
Scaffold: PH01001099
Strand: +
| Region | Start | End |
| gene | 337872 | 339372 |
| mRNA | 337872 | 339372 |
| exon | 337872 | 338192 |
| exon | 338609 | 339372 |
| CDS | 337996 | 338192 |
| CDS | 338609 | 339080 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000202 | peroxiredoxin activity, antioxidant activity, RNA_degradation GRAS Transcription_Regulator(from PlantTFDB) MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MYB-related |
| Transcription_Regulator(from PlantTFDB) | MYB_related |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00249.30 | Myb_DNA-binding | 65 | 103 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.