PH01001111G0180's details annotation
1.Annotation
ICBR annotation: uncharacterized protein ycf44, putative, expressed
Blast result AT1G49380 : 3.00E-08
Blast annotation: cytochrome c biogenesis protein family
2.Location
Scaffold: PH01001111
Strand: +
| Region | Start | End |
| gene | 124470 | 127684 |
| mRNA | 124470 | 127684 |
| exon | 124470 | 127355 |
| exon | 127439 | 127684 |
| CDS | 126806 | 127355 |
| CDS | 127439 | 127497 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000419 | RLK-Pelle_LRR-Xa (from iTAK) Ribosome Ribosome translation, rRNA processing, structural constituent of ribosome, |
| coexpression network | CFinderM000775 | Ribosome iron_ion_transmembrane_transport translation, iron ion transmembrane transporter activity, structural constituent of ribosome, intracellular, RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.