PH01001115G0490's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G29510 : 4.60E-42
Blast annotation: Protein of unknown function (DUF3527)
2.Location
Scaffold: PH01001115
Strand: +
| Region | Start | End |
| gene | 281532 | 285595 |
| mRNA | 281532 | 285595 |
| exon | 281532 | 284527 |
| exon | 284626 | 284756 |
| exon | 285304 | 285595 |
| CDS | 282146 | 284527 |
| CDS | 284626 | 284756 |
| CDS | 285304 | 285436 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000031 | |
| coexpression network | CFinderM000377 | ARR-B Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000646 | ion transport, Ubiquitin_mediated_proteolysis membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12043.7 | DUF3527 | 683 | 837 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.