PH01001117G0590's details annotation
1.Annotation
ICBR annotation: vacuolar fusion protein MON1 homolog A, putative, expressed
Blast result AT2G28390 : 4.20E-74
Blast annotation: SAND family protein
2.Location
Scaffold: PH01001117
Strand: -
| Region | Start | End |
| gene | 392859 | 402022 |
| mRNA | 392859 | 402022 |
| exon | 392859 | 393452 |
| exon | 393666 | 393757 |
| exon | 393836 | 394123 |
| exon | 394256 | 394320 |
| exon | 395413 | 395494 |
| exon | 395572 | 395663 |
| exon | 396204 | 396275 |
| exon | 397258 | 397297 |
| exon | 397421 | 397492 |
| exon | 397604 | 397683 |
| exon | 398141 | 398601 |
| exon | 399069 | 402022 |
| CDS | 393424 | 393452 |
| CDS | 393666 | 393757 |
| CDS | 393836 | 394123 |
| CDS | 394256 | 394320 |
| CDS | 395413 | 395494 |
| CDS | 395572 | 395663 |
| CDS | 396204 | 396275 |
| CDS | 397258 | 397297 |
| CDS | 397421 | 397492 |
| CDS | 397604 | 397683 |
| CDS | 398141 | 398601 |
| CDS | 399069 | 399246 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001502 | SET Transcription_Regulator(from iTAK) ribonucleoprotein complex, nucleus, histone_lysine_methylation RNA processing, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03164.13 | Mon1 | 219 | 279 |
| PF03164.13 | Mon1 | 288 | 511 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.