Annotation of co-expression genes

PH01001132G0230's details annotation

1.Annotation

ICBR annotation: PHD-finger family protein, expressed

Blast result AT5G16680 : 6.70E-73
Blast annotation: RING/FYVE/PHD zinc finger superfamily protein

2.Location

Scaffold: PH01001132
Strand: +

RegionStartEnd
gene180383191887
mRNA180383191887
exon180383181552
exon183687183767
exon184586185455
exon185697185759
exon185919186004
exon186316186803
exon186885187373
exon187486188209
exon188657188887
exon188997189121
exon189212189627
exon189933190056
exon190147191887
CDS181529181552
CDS183687183767
CDS184586185455
CDS185697185759
CDS185919186004
CDS186316186803
CDS186885187373
CDS187486188209
CDS188657188887
CDS188997189121
CDS189212189627
CDS189933190056
CDS190147190844

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001175SWI/SNF-SWI3 Transcription_Regulator(from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
nullnullnullnull

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.