PH01001133G0580's details annotation
1.Annotation
ICBR annotation: HEAT repeat family protein, putative, expressed
Blast result AT1G64790 : 0.00E+00
Blast annotation: ILITYHIA
2.Location
Scaffold: PH01001133
Strand: +
| Region | Start | End |
| gene | 391170 | 415814 |
| mRNA | 391170 | 415814 |
| exon | 391170 | 392821 |
| exon | 394362 | 394735 |
| exon | 394822 | 394953 |
| exon | 395075 | 395456 |
| exon | 395609 | 395752 |
| exon | 395832 | 396016 |
| exon | 396169 | 396295 |
| exon | 396388 | 396461 |
| exon | 396872 | 396948 |
| exon | 397049 | 397085 |
| exon | 397261 | 397427 |
| exon | 397611 | 397794 |
| exon | 397863 | 397940 |
| exon | 398819 | 398959 |
| exon | 399531 | 399653 |
| exon | 399971 | 400073 |
| exon | 400152 | 400330 |
| exon | 400956 | 401258 |
| exon | 401774 | 401914 |
| exon | 402055 | 402219 |
| exon | 402385 | 402561 |
| exon | 402651 | 402773 |
| exon | 402893 | 402973 |
| exon | 403071 | 403187 |
| exon | 403314 | 403486 |
| exon | 403959 | 404036 |
| exon | 404109 | 404256 |
| exon | 406621 | 406743 |
| exon | 406832 | 406888 |
| exon | 406974 | 407084 |
| exon | 407203 | 407394 |
| exon | 407523 | 407696 |
| exon | 408115 | 408225 |
| exon | 408314 | 408383 |
| exon | 408456 | 408534 |
| exon | 408621 | 408723 |
| exon | 408815 | 408985 |
| exon | 409141 | 409263 |
| exon | 409355 | 409468 |
| exon | 409770 | 409876 |
| exon | 409915 | 409999 |
| exon | 410078 | 410184 |
| exon | 410409 | 410523 |
| exon | 410710 | 410820 |
| exon | 410911 | 411048 |
| exon | 411125 | 411247 |
| exon | 411406 | 411477 |
| exon | 411682 | 411794 |
| exon | 412588 | 412746 |
| exon | 412818 | 412914 |
| exon | 412994 | 413176 |
| exon | 414533 | 414727 |
| exon | 415058 | 415190 |
| exon | 415401 | 415485 |
| exon | 415639 | 415814 |
| CDS | 392692 | 392821 |
| CDS | 394362 | 394735 |
| CDS | 394822 | 394953 |
| CDS | 395075 | 395456 |
| CDS | 395609 | 395752 |
| CDS | 395832 | 396016 |
| CDS | 396169 | 396295 |
| CDS | 396388 | 396461 |
| CDS | 396872 | 396948 |
| CDS | 397049 | 397085 |
| CDS | 397261 | 397427 |
| CDS | 397611 | 397794 |
| CDS | 397863 | 397940 |
| CDS | 398819 | 398959 |
| CDS | 399531 | 399653 |
| CDS | 399971 | 400073 |
| CDS | 400152 | 400330 |
| CDS | 400956 | 401258 |
| CDS | 401774 | 401914 |
| CDS | 402055 | 402219 |
| CDS | 402385 | 402561 |
| CDS | 402651 | 402773 |
| CDS | 402893 | 402973 |
| CDS | 403071 | 403187 |
| CDS | 403314 | 403486 |
| CDS | 403959 | 404036 |
| CDS | 404109 | 404256 |
| CDS | 406621 | 406743 |
| CDS | 406832 | 406888 |
| CDS | 406974 | 407084 |
| CDS | 407203 | 407394 |
| CDS | 407523 | 407696 |
| CDS | 408115 | 408225 |
| CDS | 408314 | 408383 |
| CDS | 408456 | 408534 |
| CDS | 408621 | 408723 |
| CDS | 408815 | 408985 |
| CDS | 409141 | 409263 |
| CDS | 409355 | 409468 |
| CDS | 409770 | 409876 |
| CDS | 409915 | 409999 |
| CDS | 410078 | 410184 |
| CDS | 410409 | 410523 |
| CDS | 410710 | 410820 |
| CDS | 410911 | 411048 |
| CDS | 411125 | 411247 |
| CDS | 411406 | 411477 |
| CDS | 411682 | 411794 |
| CDS | 412588 | 412746 |
| CDS | 412818 | 412914 |
| CDS | 412994 | 413176 |
| CDS | 414533 | 414727 |
| CDS | 415058 | 415190 |
| CDS | 415401 | 415485 |
| CDS | 415639 | 415678 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000852 | ATP-dependent helicase activity, helicase activity, membrane coat, Ribosome_biogenesis_in_eukaryotes |
| coexpression network | CFinderM001770 | signal recognition particle, Protein_export membrane coat, SRP-dependent cotranslational protein targeting to membrane, 7S RNA binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
| GO:0005515 | protein binding |
| GO:0006886 | intracellular protein transport |
| GO:0016192 | vesicle-mediated transport |
| GO:0030117 | membrane coat |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.