PH01001141G0110's details annotation
1.Annotation
ICBR annotation: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDasubunit precursor, putative, expressed
Blast result AT5G66680 : 2.00E-167
Blast annotation: dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein
2.Location
Scaffold: PH01001141
Strand: -
| Region | Start | End |
| gene | 139342 | 145421 |
| mRNA | 139342 | 145421 |
| exon | 139342 | 140542 |
| exon | 140591 | 140675 |
| exon | 140745 | 140828 |
| exon | 140958 | 141062 |
| exon | 141151 | 141276 |
| exon | 141348 | 141419 |
| exon | 141541 | 141616 |
| exon | 142382 | 142423 |
| exon | 142504 | 142559 |
| exon | 143026 | 143139 |
| exon | 143283 | 143336 |
| exon | 143975 | 144100 |
| exon | 144216 | 144337 |
| exon | 144860 | 145421 |
| CDS | 140436 | 140542 |
| CDS | 140591 | 140675 |
| CDS | 140745 | 140828 |
| CDS | 140958 | 141062 |
| CDS | 141151 | 141276 |
| CDS | 141348 | 141419 |
| CDS | 141541 | 141616 |
| CDS | 142382 | 142423 |
| CDS | 142504 | 142559 |
| CDS | 143026 | 143139 |
| CDS | 143283 | 143336 |
| CDS | 143975 | 144100 |
| CDS | 144216 | 144337 |
| CDS | 144860 | 145139 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001130 | protein N-linked glycosylation via asparagine, endoplasmic reticulum membrane, WNK_NRBP (from iTAK) HD-ZIP Transcription_Regulator(from PlantTFDB) HB-HD-ZIP Transcription_Regulator(from iTAK) Valine,_leucine_and_isoleucine_degradation Benzoate_degradation Synthesis_and_degradation_of_ketone_bodies Propanoate_metabolism Butanoate_metabolism Tryptophan_metabolism Carbon_fixation_pathways_in_prokaryotes Various_types_of_N-glycan_biosynthesis Lysine_degradation Fatty_acid_metabolism Glyoxylate_and_dicarboxylate_metabolism N-Glycan_biosynthesis Terpenoid_backbone_biosynthesis |
| coexpression network | CFinderM001143 | endoplasmic reticulum membrane, protein N-linked glycosylation via asparagine, Valine,_leucine_and_isoleucine_degradation Benzoate_degradation Various_types_of_N-glycan_biosynthesis Biosynthesis_of_unsaturated_fatty_acids alpha-Linolenic_acid_metabolism Fatty_acid_metabolism N-Glycan_biosynthesis response to stress, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03345.13 | DDOST_48kD | 35 | 421 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| N-Glycan biosynthesis | oligosaccharyltransferase complex subunit beta | ko00510 | K12670 |
| Various types of N-glycan biosynthesis | oligosaccharyltransferase complex subunit beta | ko00513 | K12670 |
| Protein processing in endoplasmic reticulum | oligosaccharyltransferase complex subunit beta | ko04141 | K12670 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004579 | dolichyl-diphosphooligosaccharide-protein glycotransferase activity |
| GO:0005789 | endoplasmic reticulum membrane |
| GO:0018279 | protein N-linked glycosylation via asparagine |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.