PH01001145G0360's details annotation
1.Annotation
ICBR annotation: leucyl-tRNA synthetase, cytoplasmic, putative, expressed
Blast result AT1G09620 : 0.00E+00
Blast annotation: ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases
2.Location
Scaffold: PH01001145
Strand: +
| Region | Start | End |
| gene | 216178 | 223347 |
| mRNA | 216178 | 223347 |
| exon | 216178 | 218089 |
| exon | 218363 | 218502 |
| exon | 219051 | 219127 |
| exon | 219499 | 219533 |
| exon | 219607 | 221838 |
| exon | 221926 | 222266 |
| exon | 222507 | 223347 |
| CDS | 216771 | 218089 |
| CDS | 218363 | 218502 |
| CDS | 219051 | 219127 |
| CDS | 219499 | 219533 |
| CDS | 219607 | 221838 |
| CDS | 221926 | 222266 |
| CDS | 222507 | 222982 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000346 | GH38 Glycoside_Hydrolases protein-chromophore linkage, leucyl-tRNA aminoacylation, detection_of_visible_light mannose metabolic process, ABC_transporters N-Glycan_biosynthesis Various_types_of_N-glycan_biosynthesis Aminoacyl-tRNA_biosynthesis spliceosomal complex, leucine-tRNA ligase activity, mannosidase activity, aminoacyl-tRNA_editing_activity alpha-mannosidase activity, nuclear mRNA splicing, via spliceosome, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00133.21 | tRNA-synt_1 | 90 | 440 |
| PF00133.21 | tRNA-synt_1 | 550 | 632 |
| PF00133.21 | tRNA-synt_1 | 713 | 1270 |
| PF08264.12 | Anticodon_1 | 1297 | 1383 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Aminoacyl-tRNA biosynthesis | leucyl-tRNA synthetase [EC:6.1.1.4] | ko00970 | K01869 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0002161 | aminoacyl-tRNA editing activity |
| GO:0004812 | aminoacyl-tRNA ligase activity |
| GO:0004823 | leucine-tRNA ligase activity |
| GO:0005524 | ATP binding |
| GO:0005737 | cytoplasm |
| GO:0006418 | tRNA aminoacylation for protein translation |
| GO:0006429 | leucyl-tRNA aminoacylation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.