PH01001154G0070's details annotation
1.Annotation
ICBR annotation: Spc97 / Spc98 family protein, putative, expressed
Blast result AT1G80260 : 0.00E+00
Blast annotation: Spc97 / Spc98 family of spindle pole body (SBP) component
2.Location
Scaffold: PH01001154
Strand: -
| Region | Start | End |
| gene | 66160 | 73407 |
| mRNA | 66160 | 73407 |
| exon | 66160 | 66868 |
| exon | 66978 | 67151 |
| exon | 67241 | 67372 |
| exon | 67456 | 67554 |
| exon | 67742 | 67813 |
| exon | 67892 | 67948 |
| exon | 68027 | 68200 |
| exon | 68278 | 68372 |
| exon | 68537 | 68636 |
| exon | 68718 | 68870 |
| exon | 68937 | 70073 |
| exon | 70713 | 70823 |
| exon | 70920 | 71082 |
| exon | 71460 | 71554 |
| exon | 71739 | 71930 |
| exon | 72035 | 73407 |
| CDS | 66737 | 66868 |
| CDS | 66978 | 67151 |
| CDS | 67241 | 67372 |
| CDS | 67456 | 67554 |
| CDS | 67742 | 67813 |
| CDS | 67892 | 67948 |
| CDS | 68027 | 68200 |
| CDS | 68278 | 68372 |
| CDS | 68537 | 68636 |
| CDS | 68718 | 68870 |
| CDS | 68937 | 70073 |
| CDS | 70713 | 70823 |
| CDS | 70920 | 71082 |
| CDS | 71460 | 71554 |
| CDS | 71739 | 71930 |
| CDS | 72035 | 72175 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001887 | microtubule organizing center, spindle pole, nuclear pore, microtubule cytoskeleton organization, C2H2 Transcription_Regulator(from PlantTFDB) RNA_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04130.12 | Spc97_Spc98 | 117 | 901 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000226 | microtubule cytoskeleton organization |
| GO:0000922 | spindle pole |
| GO:0005815 | microtubule organizing center |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.