PH01001160G0560's details annotation
1.Annotation
ICBR annotation: pentatricopeptide repeat domain containing protein, putative, expressed
Blast result AT1G09900 : 4.00E-166
Blast annotation: Pentatricopeptide repeat (PPR-like) superfamily protein
2.Location
Scaffold: PH01001160
Strand: +
| Region | Start | End |
| gene | 387906 | 390532 |
| mRNA | 387906 | 390532 |
| exon | 387906 | 390532 |
| CDS | 388241 | 389905 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001041 | isoprenoid biosynthetic process, |
| coexpression network | CFinderM001670 | isoprenoid biosynthetic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12854.6 | PPR_1 | 117 | 147 |
| PF13041.5 | PPR_2 | 151 | 200 |
| PF12854.6 | PPR_1 | 217 | 247 |
| PF13041.5 | PPR_2 | 256 | 305 |
| PF13041.5 | PPR_2 | 326 | 375 |
| PF13041.5 | PPR_2 | 398 | 445 |
| PF13041.5 | PPR_2 | 466 | 514 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.