PH01001164G0160's details annotation
1.Annotation
ICBR annotation: transferase family protein, putative, expressed
Blast result AT5G48930 : 7.00E-143
Blast annotation: hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase
2.Location
Scaffold: PH01001164
Strand: +
| Region | Start | End |
| gene | 72605 | 79927 |
| mRNA | 72605 | 79927 |
| exon | 72605 | 75223 |
| exon | 78452 | 78987 |
| exon | 79062 | 79927 |
| CDS | 74783 | 75223 |
| CDS | 78452 | 78987 |
| CDS | 79062 | 79347 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000526 | Phenylpropanoid_biosynthesis Phenylalanine_metabolism Stilbenoid,_diarylheptanoid_and_gingerol_biosynthesis cellular metabolic process, coenzyme binding, Flavonoid_biosynthesis Ubiquinone_and_other_terpenoid-quinone_biosynthesis |
| coexpression network | CFinderM001225 | Valine,_leucine_and_isoleucine_degradation TALE Transcription_Regulator(from PlantTFDB) HB-BELL Transcription_Regulator(from iTAK) beta-Alanine_metabolism Propanoate_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02458.14 | Transferase | 3 | 303 |
| PF02458.14 | Transferase | 325 | 415 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016747 | transferase activity, transferring acyl groups other than amino-acyl groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.