|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Phenylpropanoid_biosynthesis | 1.07E-07 | KEGG | | Phenylalanine_metabolism | 0.001307879 | KEGG | | Stilbenoid,_diarylheptanoid_and_gingerol_biosynthesis | 0.00275625 | KEGG | | cellular metabolic process, | 0.003521696 | GO:0044237 | | coenzyme binding, | 0.01320056 | GO:0050662 | | Flavonoid_biosynthesis | 0.020625414 | KEGG | | Ubiquinone_and_other_terpenoid-quinone_biosynthesis | 0.02225597 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000009G1900 | cinnamate-4-hydroxylase | AT2G30490 (0.00E+00) | | PH01000507G0250 | Cupredoxin superfamily protein | AT1G72230 (1.10E-26) | | PH01001044G0220 | cinnamoyl coa reductase 1 | AT1G15950 (6.00E-137) | | PH01001164G0160 | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | AT5G48930 (7.00E-143) | | PH01001444G0130 | cinnamoyl coa reductase 1 | AT1G15950 (1.00E-126) | | PH01001484G0450 | Ribosomal protein L4/L1 family | AT2G20060 (9.00E-102) | | PH01001751G0140 | Eukaryotic protein of unknown function (DUF872) | AT4G29850 (1.40E-16) | | PH01001933G0060 | 4-coumarate:CoA ligase 1 | AT1G51680 (2.00E-174) | | PH01003181G0090 | Protein of unknown function (DUF1223) | AT5G54240 (7.10E-35) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000319 | nucleoside_diphosphate_phosphorylation
carbohydrate phosphorylation,
histone_H4_acetylation
UTP biosynthetic process,
CTP biosynthetic process,
histone_H2A_acetylation
GTP biosynthetic process,
aromatic amino acid family metabolic process,
chromatin remodeling,
| details | | CFinderM000606 | histone_H2A_acetylation
CTP biosynthetic process,
histone_H4_acetylation
protein neddylation,
nucleoside_diphosphate_phosphorylation
UTP biosynthetic process,
GTP biosynthetic process,
carbohydrate phosphorylation,
chromatin remodeling,
| details | | CFinderM000724 | HSF Transcription_Regulator(from PlantTFDB)
metabolic process,
sterol_24-C-methyltransferase_activity
Steroid_biosynthesis
protein kinase C-activating G-protein coupled receptor signaling pathway,
steroid biosynthetic process,
diacylglycerol kinase activity,
NAD+ kinase activity,
| details | | CFinderM000816 | CMGC_CDK-CRK7-CDK9 (from iTAK)
| details | | CFinderM000925 | Ribosome
translation,
fructose_6-phosphate_metabolic_process
Fructose_and_mannose_metabolism
GARP-G2-like Transcription_Regulator(from iTAK)
G2-like Transcription_Regulator(from PlantTFDB)
diphosphate-fructose-6-phosphate 1-phosphotransferase activity,
structural constituent of ribosome,
large ribosomal subunit,
6-phosphofructokinase complex,
6-phosphofructokinase activity,
| details | | CFinderM001156 | single-stranded DNA binding,
DNA_replication
| details | | CFinderM001197 | Ribosome
translation,
G2-like Transcription_Regulator(from PlantTFDB)
GARP-G2-like Transcription_Regulator(from iTAK)
L-ascorbic acid binding,
structural constituent of ribosome,
Arginine_and_proline_metabolism
| details | | CFinderM001212 | SCY1_SCYL2 (from iTAK)
Ribosome
translation,
structural constituent of ribosome,
| details | | CFinderM001225 | Valine,_leucine_and_isoleucine_degradation
TALE Transcription_Regulator(from PlantTFDB)
HB-BELL Transcription_Regulator(from iTAK)
beta-Alanine_metabolism
Propanoate_metabolism
| details | | CFinderM001250 | Endocytosis
cysteine-type endopeptidase activity,
| details | | CFinderM001273 | | details | | CFinderM001693 | translation,
Ribosome
structural constituent of ribosome,
intracellular,
| details | | CFinderM001753 | Endocytosis
HSF Transcription_Regulator(from PlantTFDB)
single-stranded DNA binding,
| details | | CFinderM001852 | calcium-dependent phospholipid binding,
single-stranded DNA binding,
DNA_replication
| details |
4.Expression profilings |
