|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | SCY1_SCYL2 (from iTAK) | 0.000562535 | GFam | | Ribosome | 0.001307754 | KEGG | | translation, | 0.011541158 | GO:0006412 | | structural constituent of ribosome, | 0.038085823 | GO:0003735 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000317G0560 | DNA repair metallo-beta-lactamase family protein | AT1G19025 (7.20E-39) | | PH01001234G0150 | Protein kinase family protein with ARM repeat domain | AT1G22870 (5.00E-120) | | PH01001239G0400 | Ribosomal protein L1p/L10e family | AT5G22440 (6.10E-92) | | PH01001484G0450 | Ribosomal protein L4/L1 family | AT2G20060 (9.00E-102) | | PH01001649G0250 | prohibitin 2 | AT1G03860 (8.00E-122) | | PH01001997G0240 | APR-like 4 | AT1G34780 (2.80E-64) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000196 | SCY1_SCYL2 (from iTAK)
phosphatidylinositol phosphorylation,
ubiquitin ligase complex,
protein ubiquitination,
binding,
| details | | CFinderM000319 | nucleoside_diphosphate_phosphorylation
carbohydrate phosphorylation,
histone_H4_acetylation
UTP biosynthetic process,
CTP biosynthetic process,
histone_H2A_acetylation
GTP biosynthetic process,
aromatic amino acid family metabolic process,
chromatin remodeling,
| details | | CFinderM000457 | SCY1_SCYL2 (from iTAK)
| details | | CFinderM000470 | SCY1_SCYL2 (from iTAK)
| details | | CFinderM000526 | Phenylpropanoid_biosynthesis
Phenylalanine_metabolism
Stilbenoid,_diarylheptanoid_and_gingerol_biosynthesis
cellular metabolic process,
coenzyme binding,
Flavonoid_biosynthesis
Ubiquinone_and_other_terpenoid-quinone_biosynthesis
| details | | CFinderM000606 | histone_H2A_acetylation
CTP biosynthetic process,
histone_H4_acetylation
protein neddylation,
nucleoside_diphosphate_phosphorylation
UTP biosynthetic process,
GTP biosynthetic process,
carbohydrate phosphorylation,
chromatin remodeling,
| details | | CFinderM000724 | HSF Transcription_Regulator(from PlantTFDB)
metabolic process,
sterol_24-C-methyltransferase_activity
Steroid_biosynthesis
protein kinase C-activating G-protein coupled receptor signaling pathway,
steroid biosynthetic process,
diacylglycerol kinase activity,
NAD+ kinase activity,
| details | | CFinderM000816 | CMGC_CDK-CRK7-CDK9 (from iTAK)
| details | | CFinderM000925 | Ribosome
translation,
fructose_6-phosphate_metabolic_process
Fructose_and_mannose_metabolism
GARP-G2-like Transcription_Regulator(from iTAK)
G2-like Transcription_Regulator(from PlantTFDB)
diphosphate-fructose-6-phosphate 1-phosphotransferase activity,
structural constituent of ribosome,
large ribosomal subunit,
6-phosphofructokinase complex,
6-phosphofructokinase activity,
| details | | CFinderM001149 | ketol-acid reductoisomerase activity,
branched chain family amino acid biosynthetic process,
cellular amino acid biosynthetic process,
SCY1_SCYL2 (from iTAK)
coenzyme binding,
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor,
Endocytosis
| details | | CFinderM001156 | single-stranded DNA binding,
DNA_replication
| details | | CFinderM001197 | Ribosome
translation,
G2-like Transcription_Regulator(from PlantTFDB)
GARP-G2-like Transcription_Regulator(from iTAK)
L-ascorbic acid binding,
structural constituent of ribosome,
Arginine_and_proline_metabolism
| details | | CFinderM001206 | Riboflavin_metabolism
riboflavin kinase activity,
riboflavin biosynthetic process,
bZIP Transcription_Regulator(from PlantTFDB)
nucleosome assembly,
| details | | CFinderM001213 | Lipoic_acid_metabolism
RLK-Pelle_CrRLK1L-1 (from iTAK)
TKL-Pl-6 (from iTAK)
lipoate biosynthetic process,
chloroplast,
| details | | CFinderM001250 | Endocytosis
cysteine-type endopeptidase activity,
| details | | CFinderM001273 | | details | | CFinderM001469 | FAR1 Transcription_Regulator(from PlantTFDB)
CMGC_CDK-CRK7-CDK9 (from iTAK)
RNA_degradation
membrane,
| details | | CFinderM001568 | FAR1 Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-XV (from iTAK)
| details | | CFinderM001693 | translation,
Ribosome
structural constituent of ribosome,
intracellular,
| details | | CFinderM001720 | RNA_polymerase_II_transcription_cofactor_activity
NAD+ ADP-ribosyltransferase activity,
mediator complex,
nuclear pore,
regulation of transcription from RNA polymerase II promoter,
protein transport,
| details | | CFinderM001722 | GTP_catabolic_process
small GTPase mediated signal transduction,
protein transport,
signal transduction,
GTPase activity,
GTP binding,
large ribosomal subunit,
intracellular,
membrane,
nucleocytoplasmic transport,
| details | | CFinderM001753 | Endocytosis
HSF Transcription_Regulator(from PlantTFDB)
single-stranded DNA binding,
| details | | CFinderM001761 | large ribosomal subunit,
intracellular,
| details | | CFinderM001808 | protein binding,
Peroxisome
RNA_degradation
Endocytosis
| details | | CFinderM001852 | calcium-dependent phospholipid binding,
single-stranded DNA binding,
DNA_replication
| details |
4.Expression profilings |
