CFinderM000196's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
SCY1_SCYL2 (from iTAK)0.000562535GFam
phosphatidylinositol phosphorylation,0.013396615GO:0046854
ubiquitin ligase complex,0.014910961GO:0000151
protein ubiquitination,0.046094765GO:0016567
binding,0.048176861GO:0005488

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01001078G0680Pentatricopeptide repeat (PPR) superfamily proteinAT1G53330 (7.70E-70)
PH01001234G0150Protein kinase family protein with ARM repeat domainAT1G22870 (5.00E-120)
PH01001560G0360ARM repeat superfamily proteinAT1G76390 (0.00E+00)
PH01001699G0110-- (-)
PH01001797G0450myo-inositol monophosphatase like 2AT4G39120 (7.10E-23)
PH01002852G0080-AT1G24460 (2.00E-172)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000069Ribosome_biogenesis_in_eukaryotes
Ino80_complex
ATP-dependent_5'-3'_DNA_helicase_activity
rRNA (adenine-N6,N6-)-dimethyltransferase activity,
rRNA methyltransferase activity,
rRNA (adenine) methyltransferase activity,
snoRNA binding,
snRNA_pseudouridine_synthesis
rRNA modification,
details
CFinderM000204CMGC_CLK (from iTAK)
histone deacetylation,
ubiquitin ligase complex,
histone deacetylase activity,
details
CFinderM000341exosome_(RNase_complex)
COP9_signalosome
details
CFinderM000457SCY1_SCYL2 (from iTAK)
details
CFinderM000463exosome_(RNase_complex)
RNA_degradation
details
CFinderM000470SCY1_SCYL2 (from iTAK)
details
CFinderM000577COP9_signalosome
exosome_(RNase_complex)
cell communication,
RNA_degradation
phosphatidylinositol binding,
details
CFinderM000655cell communication,
details
CFinderM000692CMGC_CLK (from iTAK)
ornithine_metabolic_process
histone deacetylation,
ornithine carbamoyltransferase activity,
carboxyl- or carbamoyltransferase activity,
histone deacetylase activity,
Arginine_and_proline_metabolism
cellular amino acid metabolic process,
details
CFinderM000696snRNA_pseudouridine_synthesis
snoRNA binding,
ribosome biogenesis,
MYB_related Transcription_Regulator(from PlantTFDB)
details
CFinderM001149ketol-acid reductoisomerase activity,
branched chain family amino acid biosynthetic process,
cellular amino acid biosynthetic process,
SCY1_SCYL2 (from iTAK)
coenzyme binding,
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor,
Endocytosis
details
CFinderM001212SCY1_SCYL2 (from iTAK)
Ribosome
translation,
structural constituent of ribosome,
details
CFinderM001493ARID Transcription_Regulator(from iTAK)
magnesium_ion_transport
magnesium_ion_transmembrane_transporter_activity
details
CFinderM001547CMGC_CLK (from iTAK)
exosome_(RNase_complex)
cell communication,
RNA_degradation
details
CFinderM001850lipid metabolic process,
details
CFinderM001875histone deacetylation,
histone deacetylase activity,
DNA_replication
Mismatch_repair
Nucleotide_excision_repair
DNA_replication
details

4.Expression profilings