PH01001560G0360's details annotation
1.Annotation
ICBR annotation: armadillo/beta-catenin repeat family protein, putative, expressed
Blast result AT1G76390 : 0.00E+00
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01001560
Strand: +
| Region | Start | End |
| gene | 237399 | 247656 |
| mRNA | 237399 | 247656 |
| exon | 237399 | 239205 |
| exon | 240142 | 240336 |
| exon | 240466 | 240555 |
| exon | 240743 | 240934 |
| exon | 241345 | 241549 |
| exon | 241806 | 241906 |
| exon | 244045 | 244590 |
| exon | 244678 | 244987 |
| exon | 245722 | 247656 |
| CDS | 238795 | 239205 |
| CDS | 240142 | 240336 |
| CDS | 240466 | 240555 |
| CDS | 240743 | 240934 |
| CDS | 241345 | 241549 |
| CDS | 241806 | 241906 |
| CDS | 244045 | 244590 |
| CDS | 244678 | 244987 |
| CDS | 245722 | 247304 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000196 | SCY1_SCYL2 (from iTAK) phosphatidylinositol phosphorylation, ubiquitin ligase complex, protein ubiquitination, binding, |
| coexpression network | CFinderM000204 | CMGC_CLK (from iTAK) histone deacetylation, ubiquitin ligase complex, histone deacetylase activity, |
| coexpression network | CFinderM000341 | exosome_(RNase_complex) COP9_signalosome |
| coexpression network | CFinderM000463 | exosome_(RNase_complex) RNA_degradation |
| coexpression network | CFinderM000577 | COP9_signalosome exosome_(RNase_complex) cell communication, RNA_degradation phosphatidylinositol binding, |
| coexpression network | CFinderM000655 | cell communication, |
| coexpression network | CFinderM001547 | CMGC_CLK (from iTAK) exosome_(RNase_complex) cell communication, RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04564.14 | U-box | 426 | 500 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000151 | ubiquitin ligase complex |
| GO:0004842 | ubiquitin-protein ligase activity |
| GO:0005488 | binding |
| GO:0005515 | protein binding |
| GO:0016567 | protein ubiquitination |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.