PH01002852G0080's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G24460 : 2.00E-172
Blast annotation: -
2.Location
Scaffold: PH01002852
Strand: +
| Region | Start | End |
| gene | 65484 | 75617 |
| mRNA | 65484 | 75617 |
| exon | 65484 | 66173 |
| exon | 66288 | 66494 |
| exon | 66621 | 69492 |
| exon | 70000 | 70424 |
| exon | 71057 | 71900 |
| exon | 72014 | 72669 |
| exon | 72968 | 73112 |
| exon | 73194 | 73275 |
| exon | 75080 | 75617 |
| CDS | 66024 | 66173 |
| CDS | 66288 | 66494 |
| CDS | 66621 | 69492 |
| CDS | 70000 | 70424 |
| CDS | 71057 | 71900 |
| CDS | 72014 | 72669 |
| CDS | 72968 | 73112 |
| CDS | 73194 | 73275 |
| CDS | 75080 | 75182 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000069 | Ribosome_biogenesis_in_eukaryotes Ino80_complex ATP-dependent_5'-3'_DNA_helicase_activity rRNA (adenine-N6,N6-)-dimethyltransferase activity, rRNA methyltransferase activity, rRNA (adenine) methyltransferase activity, snoRNA binding, snRNA_pseudouridine_synthesis rRNA modification, |
| coexpression network | CFinderM000196 | SCY1_SCYL2 (from iTAK) phosphatidylinositol phosphorylation, ubiquitin ligase complex, protein ubiquitination, binding, |
| coexpression network | CFinderM000204 | CMGC_CLK (from iTAK) histone deacetylation, ubiquitin ligase complex, histone deacetylase activity, |
| coexpression network | CFinderM000341 | exosome_(RNase_complex) COP9_signalosome |
| coexpression network | CFinderM000457 | SCY1_SCYL2 (from iTAK) |
| coexpression network | CFinderM000463 | exosome_(RNase_complex) RNA_degradation |
| coexpression network | CFinderM000470 | SCY1_SCYL2 (from iTAK) |
| coexpression network | CFinderM000692 | CMGC_CLK (from iTAK) ornithine_metabolic_process histone deacetylation, ornithine carbamoyltransferase activity, carboxyl- or carbamoyltransferase activity, histone deacetylase activity, Arginine_and_proline_metabolism cellular amino acid metabolic process, |
| coexpression network | CFinderM000696 | snRNA_pseudouridine_synthesis snoRNA binding, ribosome biogenesis, MYB_related Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001493 | ARID Transcription_Regulator(from iTAK) magnesium_ion_transport magnesium_ion_transmembrane_transporter_activity |
| coexpression network | CFinderM001850 | lipid metabolic process, |
| coexpression network | CFinderM001875 | histone deacetylation, histone deacetylase activity, DNA_replication Mismatch_repair Nucleotide_excision_repair DNA_replication |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.