PH01001649G0250's details annotation
1.Annotation
ICBR annotation: mitochondrial prohibitin complex protein 2, putative, expressed
Blast result AT1G03860 : 8.00E-122
Blast annotation: prohibitin 2
2.Location
Scaffold: PH01001649
Strand: +
| Region | Start | End |
| gene | 248169 | 253754 |
| mRNA | 248169 | 253754 |
| exon | 248169 | 248611 |
| exon | 250424 | 250540 |
| exon | 251481 | 251651 |
| exon | 251757 | 251969 |
| exon | 252397 | 253754 |
| CDS | 248438 | 248611 |
| CDS | 250424 | 250540 |
| CDS | 251481 | 251651 |
| CDS | 251757 | 251969 |
| CDS | 252397 | 252588 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001206 | Riboflavin_metabolism riboflavin kinase activity, riboflavin biosynthetic process, bZIP Transcription_Regulator(from PlantTFDB) nucleosome assembly, |
| coexpression network | CFinderM001212 | SCY1_SCYL2 (from iTAK) Ribosome translation, structural constituent of ribosome, |
| coexpression network | CFinderM001469 | FAR1 Transcription_Regulator(from PlantTFDB) CMGC_CDK-CRK7-CDK9 (from iTAK) RNA_degradation membrane, |
| coexpression network | CFinderM001568 | FAR1 Transcription_Regulator(from PlantTFDB) RLK-Pelle_LRR-XV (from iTAK) |
| coexpression network | CFinderM001720 | RNA_polymerase_II_transcription_cofactor_activity NAD+ ADP-ribosyltransferase activity, mediator complex, nuclear pore, regulation of transcription from RNA polymerase II promoter, protein transport, |
| coexpression network | CFinderM001753 | Endocytosis HSF Transcription_Regulator(from PlantTFDB) single-stranded DNA binding, |
| coexpression network | CFinderM001761 | large ribosomal subunit, intracellular, |
| coexpression network | CFinderM001808 | protein binding, Peroxisome RNA_degradation Endocytosis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01145.24 | Band_7 | 39 | 214 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.