Gene details

Annotation of co-expression genes

PH01001239G0400's details annotation

1.Annotation

ICBR annotation: nucleic acid binding protein, putative, expressed

Blast result AT5G22440 : 6.10E-92
Blast annotation: Ribosomal protein L1p/L10e family

2.Location

Scaffold: PH01001239
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000925	Ribosome translation, fructose_6-phosphate_metabolic_process Fructose_and_mannose_metabolism GARP-G2-like Transcription_Regulator(from iTAK) G2-like Transcription_Regulator(from PlantTFDB) diphosphate-fructose-6-phosphate 1-phosphotransferase activity, structural constituent of ribosome, large ribosomal subunit, 6-phosphofructokinase complex, 6-phosphofructokinase activity,
coexpression network	CFinderM001212	SCY1_SCYL2 (from iTAK) Ribosome translation, structural constituent of ribosome,
coexpression network	CFinderM001722	GTP_catabolic_process small GTPase mediated signal transduction, protein transport, signal transduction, GTPase activity, GTP binding, large ribosomal subunit, intracellular, membrane, nucleocytoplasmic transport,
coexpression network	CFinderM001761	large ribosomal subunit, intracellular,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Ribosome	large subunit ribosomal protein L10Ae	ko03011	K02865

10.Gene Ontology

GO Accession	GO Annotation
GO:0003676	nucleic acid binding
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0005622	intracellular
GO:0006412	translation
GO:0015934	large ribosomal subunit

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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