|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000025G0890 | EXS (ERD1/XPR1/SYG1) family protein | AT5G35730 (3.50E-68) | | PH01001484G0450 | Ribosomal protein L4/L1 family | AT2G20060 (9.00E-102) | | PH01001911G0130 | acetyl-CoA synthetase | AT5G36880 (0.00E+00) | | PH01002294G0240 | lipid phosphate phosphatase 2 | AT1G15080 (2.90E-38) | | PH01002443G0110 | Riboflavin synthase-like superfamily protein | AT1G19230 (3.00E-130) | | PH01003834G0160 | Eukaryotic aspartyl protease family protein | AT1G49050 (4.00E-119) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000319 | nucleoside_diphosphate_phosphorylation
carbohydrate phosphorylation,
histone_H4_acetylation
UTP biosynthetic process,
CTP biosynthetic process,
histone_H2A_acetylation
GTP biosynthetic process,
aromatic amino acid family metabolic process,
chromatin remodeling,
| details | | CFinderM000526 | Phenylpropanoid_biosynthesis
Phenylalanine_metabolism
Stilbenoid,_diarylheptanoid_and_gingerol_biosynthesis
cellular metabolic process,
coenzyme binding,
Flavonoid_biosynthesis
Ubiquinone_and_other_terpenoid-quinone_biosynthesis
| details | | CFinderM000606 | histone_H2A_acetylation
CTP biosynthetic process,
histone_H4_acetylation
protein neddylation,
nucleoside_diphosphate_phosphorylation
UTP biosynthetic process,
GTP biosynthetic process,
carbohydrate phosphorylation,
chromatin remodeling,
| details | | CFinderM000724 | HSF Transcription_Regulator(from PlantTFDB)
metabolic process,
sterol_24-C-methyltransferase_activity
Steroid_biosynthesis
protein kinase C-activating G-protein coupled receptor signaling pathway,
steroid biosynthetic process,
diacylglycerol kinase activity,
NAD+ kinase activity,
| details | | CFinderM000744 | Arginine_and_proline_metabolism
Phagosome
| details | | CFinderM000816 | CMGC_CDK-CRK7-CDK9 (from iTAK)
| details | | CFinderM000925 | Ribosome
translation,
fructose_6-phosphate_metabolic_process
Fructose_and_mannose_metabolism
GARP-G2-like Transcription_Regulator(from iTAK)
G2-like Transcription_Regulator(from PlantTFDB)
diphosphate-fructose-6-phosphate 1-phosphotransferase activity,
structural constituent of ribosome,
large ribosomal subunit,
6-phosphofructokinase complex,
6-phosphofructokinase activity,
| details | | CFinderM001156 | single-stranded DNA binding,
DNA_replication
| details | | CFinderM001197 | Ribosome
translation,
G2-like Transcription_Regulator(from PlantTFDB)
GARP-G2-like Transcription_Regulator(from iTAK)
L-ascorbic acid binding,
structural constituent of ribosome,
Arginine_and_proline_metabolism
| details | | CFinderM001212 | SCY1_SCYL2 (from iTAK)
Ribosome
translation,
structural constituent of ribosome,
| details | | CFinderM001250 | Endocytosis
cysteine-type endopeptidase activity,
| details | | CFinderM001693 | translation,
Ribosome
structural constituent of ribosome,
intracellular,
| details | | CFinderM001753 | Endocytosis
HSF Transcription_Regulator(from PlantTFDB)
single-stranded DNA binding,
| details | | CFinderM001852 | calcium-dependent phospholipid binding,
single-stranded DNA binding,
DNA_replication
| details |
4.Expression profilings |
