PH01001181G0320's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G30280 : 7.90E-51
Blast annotation: RNA-directed DNA methylation 4
2.Location
Scaffold: PH01001181
Strand: +
| Region | Start | End |
| gene | 201015 | 206651 |
| mRNA | 201015 | 206651 |
| exon | 201015 | 201235 |
| exon | 201361 | 201450 |
| exon | 201670 | 201764 |
| exon | 204127 | 204198 |
| exon | 204448 | 204489 |
| exon | 204896 | 205092 |
| exon | 205131 | 205249 |
| exon | 205716 | 205797 |
| exon | 205869 | 205942 |
| exon | 205999 | 206651 |
| CDS | 201118 | 201235 |
| CDS | 201361 | 201450 |
| CDS | 201670 | 201764 |
| CDS | 204127 | 204198 |
| CDS | 204448 | 204489 |
| CDS | 204896 | 205092 |
| CDS | 205131 | 205249 |
| CDS | 205716 | 205797 |
| CDS | 205869 | 205942 |
| CDS | 205999 | 206180 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001862 | clathrin_coat clathrin_coat_assembly 1-phosphatidylinositol_binding clathrin_binding cellular metabolic process, phospholipid binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.