PH01001184G0040's details annotation
1.Annotation
ICBR annotation: no apical meristem protein, putative, expressed
Blast result AT5G18270 : 4.40E-75
Blast annotation: Arabidopsis NAC domain containing protein 87
2.Location
Scaffold: PH01001184
Strand: +
| Region | Start | End |
| gene | 38749 | 40546 |
| mRNA | 38749 | 40546 |
| exon | 38749 | 39340 |
| exon | 39458 | 39735 |
| exon | 39905 | 40546 |
| CDS | 39148 | 39340 |
| CDS | 39458 | 39735 |
| CDS | 39905 | 40456 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000404 | Valine,_leucine_and_isoleucine_degradation Benzoate_degradation RWP-RK Transcription_Regulator(from iTAK) Nin-like Transcription_Regulator(from PlantTFDB) Biosynthesis_of_unsaturated_fatty_acids alpha-Linolenic_acid_metabolism Fatty_acid_metabolism Peroxisome G2-like Transcription_Regulator(from PlantTFDB) GARP-G2-like Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM000578 | extracellular matrix, NF-YC Transcription_Regulator(from PlantTFDB) protein-disulfide_reductase_activity intracellular_signal_transduction metallopeptidase activity, NAC Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | NAC |
| Transcription_Regulator(from PlantTFDB) | NAC |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02365.14 | NAM | 19 | 144 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.