Annotation of co-expression genes

PH01001196G0170's details annotation

1.Annotation

ICBR annotation: enolase, putative, expressed

Blast result AT2G36530 : 9.60E-96
Blast annotation: Enolase

2.Location

Scaffold: PH01001196
Strand: -

RegionStartEnd
gene113489115753
mRNA113489115753
exon113489113704
exon114010114061
exon114152114240
exon114336114386
exon114466114660
exon114742114822
exon114912114974
exon115259115753
CDS113624113704
CDS114010114061
CDS114152114240
CDS114336114386
CDS114466114660
CDS114742114822
CDS114912114974
CDS115259115549

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000900phosphopyruvate hydratase complex,
glycolysis,
phosphopyruvate hydratase activity,
Alanine,_aspartate_and_glutamate_metabolism
TKL-Pl-6 (from iTAK)
magnesium ion binding,
argininosuccinate synthase activity,
6-phosphofructokinase complex,
arginine biosynthetic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00113.21Enolase_C95274

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000015phosphopyruvate hydratase complex
GO:0000287magnesium ion binding
GO:0004634phosphopyruvate hydratase activity
GO:0006096glycolysis

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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