Annotation of co-expression genes

PH01001196G0200's details annotation

1.Annotation

ICBR annotation: enolase, putative, expressed

Blast result AT2G36530 : 4.50E-84
Blast annotation: Enolase

2.Location

Scaffold: PH01001196
Strand: -

RegionStartEnd
gene120407123859
mRNA120407123859
exon120407120887
exon120971121051
exon121312121392
exon121495121581
exon121665121712
exon122753122817
exon122981123044
exon123703123859
CDS120672120887
CDS120971121051
CDS121312121392
CDS121495121581
CDS121665121712
CDS122753122817
CDS122981123044
CDS123703123771

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000900phosphopyruvate hydratase complex,
glycolysis,
phosphopyruvate hydratase activity,
Alanine,_aspartate_and_glutamate_metabolism
TKL-Pl-6 (from iTAK)
magnesium ion binding,
argininosuccinate synthase activity,
6-phosphofructokinase complex,
arginine biosynthetic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03952.15Enolase_N5138
PF00113.21Enolase_C137190

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000015phosphopyruvate hydratase complex
GO:0000287magnesium ion binding
GO:0004634phosphopyruvate hydratase activity
GO:0006096glycolysis

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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