PH01001204G0140's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G56720 : 1.80E-34
Blast annotation: -
2.Location
Scaffold: PH01001204
Strand: -
| Region | Start | End |
| gene | 100699 | 104313 |
| mRNA | 100699 | 104313 |
| exon | 100699 | 101606 |
| exon | 101756 | 101824 |
| exon | 101984 | 102084 |
| exon | 102364 | 102486 |
| exon | 102570 | 104313 |
| CDS | 101448 | 101606 |
| CDS | 101756 | 101824 |
| CDS | 101984 | 102084 |
| CDS | 102364 | 102486 |
| CDS | 102570 | 103311 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001391 | Lysine_biosynthesis L,L-diaminopimelate_aminotransferase_activity C3H Transcription_Regulator(from PlantTFDB) lysine biosynthetic process via diaminopimelate, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF15477.5 | SMAP | 327 | 396 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.