PH01001206G0170's details annotation
1.Annotation
ICBR annotation: CSLC10 - cellulose synthase-like family C
Blast result AT4G07960 : 0.00E+00
Blast annotation: Cellulose-synthase-like C12
2.Location
Scaffold: PH01001206
Strand: -
| Region | Start | End |
| gene | 121913 | 127777 |
| mRNA | 121913 | 127777 |
| exon | 121913 | 123407 |
| exon | 124211 | 124324 |
| exon | 124419 | 124709 |
| exon | 124797 | 125105 |
| exon | 125197 | 125525 |
| exon | 125634 | 127777 |
| CDS | 122787 | 123407 |
| CDS | 124211 | 124324 |
| CDS | 124419 | 124709 |
| CDS | 124797 | 125105 |
| CDS | 125197 | 125525 |
| CDS | 125634 | 125916 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000178 | cellular glucan metabolic process, xyloglucan:xyloglucosyl transferase activity, cell wall, apoplast, GH16 Glycoside_Hydrolases WRKY Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13641.5 | Glyco_tranf_2_3 | 191 | 424 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.