PH01001209G0060's details annotation
1.Annotation
ICBR annotation: phosphatidylinositol kinase, putative, expressed
Blast result AT5G40820 : 5.20E-46
Blast annotation: Ataxia telangiectasia-mutated and RAD3-related
2.Location
Scaffold: PH01001209
Strand: -
| Region | Start | End |
| gene | 43837 | 65303 |
| mRNA | 43837 | 65303 |
| exon | 43837 | 44952 |
| exon | 45009 | 45117 |
| exon | 45605 | 46166 |
| exon | 47143 | 47415 |
| exon | 47744 | 47836 |
| exon | 48082 | 48141 |
| exon | 48192 | 48322 |
| exon | 48452 | 48565 |
| exon | 49054 | 51892 |
| exon | 51985 | 52038 |
| exon | 52235 | 52682 |
| exon | 55631 | 56684 |
| exon | 57445 | 57559 |
| exon | 57657 | 57845 |
| exon | 57921 | 62796 |
| exon | 62887 | 65303 |
| CDS | 44853 | 44952 |
| CDS | 45009 | 45117 |
| CDS | 45605 | 46166 |
| CDS | 47143 | 47415 |
| CDS | 47744 | 47836 |
| CDS | 48082 | 48141 |
| CDS | 48192 | 48322 |
| CDS | 48452 | 48565 |
| CDS | 49054 | 51892 |
| CDS | 51985 | 52038 |
| CDS | 52235 | 52682 |
| CDS | 55631 | 56684 |
| CDS | 57445 | 57559 |
| CDS | 57657 | 57845 |
| CDS | 57921 | 62796 |
| CDS | 62887 | 63113 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000862 | DBP Transcription_Regulator(from iTAK) Golgi stack, GPI-anchor transamidase complex, |
| coexpression network | CFinderM000938 | proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, binding, mRNA_surveillance_pathway hydrogen ion transmembrane transporter activity, ATP hydrolysis coupled proton transport, TORC1_complex Phagosome Oxidative_phosphorylation phosphotransferase activity, alcohol group as acceptor, TOR_signaling rRNA_catabolic_process |
| coexpression network | CFinderM001230 | base-excision repair, mRNA_surveillance_pathway DNA repair, |
| coexpression network | CFinderM001310 | mRNA_surveillance_pathway binding, |
| coexpression network | CFinderM001484 | RLK-Pelle_RLCK-VI (from iTAK) mRNA_surveillance_pathway |
| coexpression network | CFinderM001821 | protein processing, mRNA_surveillance_pathway protein binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF15785.4 | SMG1 | 643 | 1129 |
| PF00454.26 | PI3_PI4_kinase | 1987 | 2264 |
| PF02260.19 | FATC | 3717 | 3747 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| mRNA surveillance pathway | PI-3-kinase-related kinase SMG-1 | ko03015 | K08873 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
| GO:0005515 | protein binding |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
| GO:0016773 | phosphotransferase activity, alcohol group as acceptor |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.