PH01001209G0210's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01001209
Strand: -
| Region | Start | End |
| gene | 161653 | 162805 |
| mRNA | 161653 | 162805 |
| exon | 161653 | 162209 |
| exon | 162260 | 162526 |
| exon | 162688 | 162805 |
| CDS | 162204 | 162209 |
| CDS | 162260 | 162526 |
| CDS | 162688 | 162789 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001377 | C2H2 Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001541 | Terpenoid_backbone_biosynthesis 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, 1,3-beta-D-glucan synthase complex, (1->3)-beta-D-glucan biosynthetic process, terpenoid biosynthetic process, iron-sulfur cluster assembly, |
| coexpression network | CFinderM001750 | mTERF Transcription_Regulator(from iTAK) endonuclease activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.