PH01001214G0050's details annotation
1.Annotation
ICBR annotation: NBS-LRR disease resistance protein, putative, expressed
Blast result AT3G14460 : 1.70E-49
Blast annotation: LRR and NB-ARC domains-containing disease resistance protein
2.Location
Scaffold: PH01001214
Strand: -
| Region | Start | End |
| gene | 29064 | 34660 |
| mRNA | 29064 | 34660 |
| exon | 29064 | 31406 |
| exon | 31812 | 33602 |
| exon | 34152 | 34232 |
| exon | 34295 | 34660 |
| CDS | 29365 | 31406 |
| CDS | 31812 | 33602 |
| CDS | 34152 | 34232 |
| CDS | 34295 | 34535 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000535 | GT37 GlycosylTransferases CMGC_MAPK (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00931.21 | NB-ARC | 197 | 476 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006952 | defense response |
| GO:0043531 | ADP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.