Annotation of co-expression genes

PH01001217G0130's details annotation

1.Annotation

ICBR annotation: TKL_IRAK_CR4L.5 - The CR4L subfamily has homology with Crinkly4, expressed

Blast result AT3G51990 : 3.40E-53
Blast annotation: Protein kinase superfamily protein

2.Location

Scaffold: PH01001217
Strand: +

RegionStartEnd
gene101058103831
mRNA101058103831
exon101058103831
CDS101937103283

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001304nucleoside-triphosphatase activity,
ATPase activity, coupled to transmembrane movement of substances,
GT47 GlycosylTransferases
RLK-Pelle_CR4L (from iTAK)
ABC_transporters
ATPase activity,
ATP binding,
nucleotide binding,
SNF2 Transcription_Regulator(from iTAK)
coexpression networkCFinderM001432RLK-Pelle_CR4L (from iTAK)
ubiquitin ligase complex,
Ubiquitin_mediated_proteolysis
regulation of ARF GTPase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase23193

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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