PH01001222G0560's details annotation
1.Annotation
ICBR annotation: protein of unknown function domain containing protein, expressed
Blast result AT1G20220 : 2.30E-36
Blast annotation: Alba DNA/RNA-binding protein
2.Location
Scaffold: PH01001222
Strand: -
| Region | Start | End |
| gene | 372461 | 377547 |
| mRNA | 372461 | 377547 |
| exon | 372461 | 373716 |
| exon | 374216 | 374274 |
| exon | 374588 | 374676 |
| exon | 374765 | 374845 |
| exon | 375624 | 377547 |
| CDS | 373316 | 373716 |
| CDS | 374216 | 374274 |
| CDS | 374588 | 374676 |
| CDS | 374765 | 374845 |
| CDS | 375624 | 375755 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000535 | GT37 GlycosylTransferases CMGC_MAPK (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01918.20 | Alba | 19 | 81 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.