Annotation of co-expression genes

PH01001235G0120's details annotation

1.Annotation

ICBR annotation: IBR domain containing protein

Blast result AT5G60250 : 1.10E-86
Blast annotation: zinc finger (C3HC4-type RING finger) family protein

2.Location

Scaffold: PH01001235
Strand: -

RegionStartEnd
gene6315366480
mRNA6315366480
exon6315363618
exon6380864589
exon6559266480
CDS6339963618
CDS6380864589
CDS6559266284

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000569CMGC_Pl-Tthe (from iTAK)
1,3-beta-D-glucan synthase activity,
1,3-beta-D-glucan synthase complex,
membrane,
Regulation_of_autophagy

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13456.5RVT_3164278
PF01485.20IBR372444
PF01485.20IBR460512

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding
GO:0005515protein binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.