Annotation of co-expression genes

PH01001240G0120's details annotation

1.Annotation

ICBR annotation: uncharacterized glycosyltransferase, putative, expressed

Blast result AT5G20250 : 0.00E+00
Blast annotation: Raffinose synthase family protein

2.Location

Scaffold: PH01001240
Strand: -

RegionStartEnd
gene7707184196
mRNA7707184196
exon7707177837
exon7790278259
exon7862978763
exon7884979058
exon7915179701
exon7982680255
exon8039080692
exon8350483593
exon8373284196
CDS7748477837
CDS7790278259
CDS7862978763
CDS7884979058
CDS7915179701
CDS7982680255
CDS8039080692
CDS8350483593
CDS8373283919

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000038bHLH Transcription_Regulator(from PlantTFDB)
coexpression networkCFinderM000042exocyst,
Galactose_metabolism
lipid biosynthetic process,
exocytosis,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF05691.11Raffinose_syn138339
PF05691.11Raffinose_syn349856

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Galactose metabolismraffinose synthase [EC:2.4.1.82]ko00052K06617

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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