PH01001274G0070's details annotation
1.Annotation
ICBR annotation: pex14, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01001274
Strand: +
| Region | Start | End |
| gene | 41535 | 45314 |
| mRNA | 41535 | 45314 |
| exon | 41535 | 43701 |
| exon | 43934 | 44001 |
| exon | 44734 | 45314 |
| CDS | 43662 | 43701 |
| CDS | 43934 | 44001 |
| CDS | 44734 | 45171 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000695 | STE_STE11 (from iTAK) RLK-Pelle_RLCK-VIIa-1 (from iTAK) SNARE_interactions_in_vesicular_transport |
| coexpression network | CFinderM000801 | arsenite_transport arsenite transmembrane transporter activity, galactose metabolic process, G2-like Transcription_Regulator(from PlantTFDB) GARP-G2-like Transcription_Regulator(from iTAK) UDP-glucose 4-epimerase activity, |
| coexpression network | CFinderM000868 | proteasome_regulatory_particle Peroxisome Proteasome Fatty_acid_metabolism |
| coexpression network | CFinderM000991 | cation:chloride_symporter_activity proteasome_regulatory_particle Proteasome microtubule binding, cytokinesis ion transport, microtubule cytoskeleton organization, |
| coexpression network | CFinderM001174 | arsenite transmembrane transporter activity, arsenite_transport DNA photolyase activity, |
| coexpression network | CFinderM001285 | PcG_protein_complex cation:chloride_symporter_activity SET Transcription_Regulator(from iTAK) cytoskeleton, ion transport, |
| coexpression network | CFinderM001494 | GRAS Transcription_Regulator(from PlantTFDB) protein catabolic process, |
| coexpression network | CFinderM001823 | large ribosomal subunit, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.