PH01001281G0390's details annotation
1.Annotation
ICBR annotation: las1-like family protein, putative, expressed
Blast result AT5G12220 : 5.50E-35
Blast annotation: las1-like family protein
2.Location
Scaffold: PH01001281
Strand: -
| Region | Start | End |
| gene | 212020 | 214839 |
| mRNA | 212020 | 214839 |
| exon | 212020 | 212223 |
| exon | 212301 | 212497 |
| exon | 212702 | 212757 |
| exon | 212841 | 212947 |
| exon | 213815 | 213889 |
| exon | 213993 | 214084 |
| exon | 214167 | 214839 |
| CDS | 212205 | 212223 |
| CDS | 212301 | 212497 |
| CDS | 212702 | 212757 |
| CDS | 212841 | 212947 |
| CDS | 213815 | 213889 |
| CDS | 213993 | 214084 |
| CDS | 214167 | 214325 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001516 | Ribosome_biogenesis_in_eukaryotes MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001517 | N-acetyl-gamma-glutamyl-phosphate reductase activity, cellular amino acid biosynthetic process, cellular amino acid metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04031.12 | Las1 | 27 | 163 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.