PH01001292G0350's details annotation
1.Annotation
ICBR annotation: No apical meristem protein, putative, expressed
Blast result AT1G69490 : 1.50E-69
Blast annotation: NAC-like, activated by AP3/PI
2.Location
Scaffold: PH01001292
Strand: +
| Region | Start | End |
| gene | 295514 | 297875 |
| mRNA | 295514 | 297875 |
| exon | 295514 | 295892 |
| exon | 296039 | 296346 |
| exon | 296842 | 297875 |
| CDS | 295727 | 295892 |
| CDS | 296039 | 296346 |
| CDS | 296842 | 297444 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000644 | NAC Transcription_Regulator(from PlantTFDB) regulation of transcription, DNA-dependent, Trihelix Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001121 | HB-other Transcription_Regulator(from PlantTFDB) transcription_regulatory_region_sequence-specific_DNA_binding HD-ZIP Transcription_Regulator(from PlantTFDB) regulation of transcription, DNA-dependent, NAC Transcription_Regulator(from PlantTFDB) DNA binding, sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity, Rab GTPase activator activity, Glyoxylate_and_dicarboxylate_metabolism Citrate_cycle_(TCA_cycle) Lysine_biosynthesis Carbon_fixation_pathways_in_prokaryotes regulation of Rab GTPase activity, nucleus, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | NAC |
| Transcription_Regulator(from PlantTFDB) | NAC |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02365.14 | NAM | 10 | 136 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.