Annotation of co-expression genes

PH01001295G0430's details annotation

1.Annotation

ICBR annotation: OsWAK50 - OsWAK receptor-like protein kinase, expressed

Blast result AT1G21230 : 3.00E-131
Blast annotation: wall associated kinase 5

2.Location

Scaffold: PH01001295
Strand: +

RegionStartEnd
gene252075255106
mRNA252075255106
exon252075253400
exon253495255106
CDS252506253400
CDS253495255002

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000192protein serine/threonine kinase activity,
protein kinase activity,
exonuclease activity,
protein phosphorylation,
transferase activity, transferring phosphorus-containing groups,
ATP binding,
polysaccharide_binding
RLK-Pelle_SD-2b (from iTAK)
RLK-Pelle_WAK (from iTAK)
ubiquitin ligase complex,
RLK-Pelle_LRR-Xb-2 (from iTAK)
coexpression networkCFinderM000668RLK-Pelle_WAK (from iTAK)
polysaccharide_binding
protein binding,
calcium ion binding,
ubiquitin ligase complex,
potassium_ion_transmembrane_transport
protein ubiquitination,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13947.5GUB_WAK_bind27131
PF00069.24Pkinase455718

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005509calcium ion binding
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups
GO:0030247polysaccharide binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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